Cytoscape

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. The installer executable (.exe) Supports a silent installation command line switch (-q). It requires Java 17 and will automatically install Adoptium OpenJDK Java 17 if no Java environment is detected.